PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106642.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 449aa    MW: 48926.1 Da    PI: 8.1936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106642.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.3e-16240287355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  XP_010106642.1 240 ATHNQSERKRRDRINQKMKALQKLVPNA-----CKTDKASMLDEVIEYLKQLQ 287
                     69*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-18235295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.339237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19240310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14240287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-16241291No hitNo description
SMARTSM003533.8E-17243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSHCVVPNWN LRHQRQEQVE GEEGNRSSHV PNQQNPTTTT TTSSSHLVVP ISNYQVKELT  60
PANGQLDMHG LGGLLPLGPA KPTWGRTGGT LESIVHQATC HTHDPNVTHH GHGQTPATIG  120
SNIVGPLIGK WAENSGQAPP PTLVMRKRSR SDSDYGGRNL SSSSSMQEEH GGPSASASAT  180
FCRESDTTMM TWASFESPHN LKNKTNDEDF ISHSDMENHD EDQETKSGRS NSTRRSRAAA  240
THNQSERKRR DRINQKMKAL QKLVPNACKT DKASMLDEVI EYLKQLQAQV QMMNNVRNMA  300
PPSQPQMMIS LGMQQQLQMS LLARMEMAMG MGMLDMSSMA RAAPQSLLPP LIHPNLFAAA  360
VANAGGGPTF APQPFMVPHM VPAQAKPNPA AASSTCAPSV PLPDPYCALL AQSMNMELYN  420
KMAALYSQRI NQTTQATSSP SRSSHVQQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028159.10.0transcription factor PIF7
TrEMBLW9RUJ30.0W9RUJ3_9ROSA; Transcription factor UNE10
STRINGXP_010106642.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-33bHLH family protein