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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010105461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28740.4 Da PI: 8.588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 184 | 228 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ +eL +l+P + K+ ae+ + A +Y+k Lq XP_010105461.1 184 SIAARERRRKITEKTQELGKLIPGgN------KMKTAEMFQAAYKYVKFLQ 228 67889******************955......9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 178 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.763 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.55E-4 | 181 | 226 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-10 | 181 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-7 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTSIFYLHGS KLCYNLGSSS LQSLISPESY INFPQTQTEL DSSFFFDFDD DNNLSLSNTS 60 IDSLFDTNVK DCSTAFLPNF YSTAEHSLVS LSPKKPYVNS QDEEARHPKR QKITTSENHC 120 RFTYASELSN AAFVPNPSWR DVNIFPSSQA LVFNACGNQE MKSDMKRGNS SSGSTSTTAV 180 SAQSIAARER RRKITEKTQE LGKLIPGGNK MKTAEMFQAA YKYVKFLQAQ LAVLLLIRSI 240 RVISTSLKEL SSLISSLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010105461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105461.1 | 0.0 | transcription factor bHLH52 | ||||
TrEMBL | W9RRA4 | 0.0 | W9RRA4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010105461.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 4e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21391288 |