PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105454.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YA
Protein Properties Length: 352aa    MW: 39057 Da    PI: 8.8086
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105454.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.2e-32177233158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+RgsgGrF
  XP_010105454.1 177 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGSGGRF 233
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-37175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.375176236IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.2E-28178233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24179201IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHQKSNGTNH SEFSDPNTNT RTDNNPVQST VNSQPWWGIS HHGISKDHVF GGTTMSLSQP  60
NNLNGDFGTQ NSNSLSQERQ STGHDDGSDL GLTSKEIIQS DRKCGEDQHM QRVSPVTPPT  120
MTEYLAPPPQ LEFACSSYPY SDPYYGVMPA YGPHALVQPH CLGLSSARMA LPLDMAEEPV  180
YVNAKQYHGI LRRRQSRAKA ELEKKLIKVR KPYLHESRHL HAMRRARGSG GRFLNTKNND  240
GTAANPTANN NTTSSGATTK ADQINSSSTK PVWSDSYTDL REPTDRHMQG IHQNKTYSNV  300
NSGNSCYLNN QGFQLSAYHS LLGDRRAEEG ELSGNHRDRI ITNGTHRALT IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-20177240265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105454.10.0nuclear transcription factor Y subunit A-1 isoform X2
TrEMBLW9RZH50.0W9RZH5_9ROSA; Nuclear transcription factor Y subunit A-9
STRINGXP_010105454.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.37e-44nuclear factor Y, subunit A1