PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010105437.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 259aa MW: 28851.1 Da PI: 9.0895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105437.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	67	113	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L XP_010105437.1 67 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 113 79***********************8.....7*********9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.97	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-12	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-14	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-10	67	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.89E-9	67	116	No hit	No description
SMART	SM00353	2.0E-10	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.39E-5	166	231	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MENFCHQYSS PNQPKEANFS ESSLLVPWHI PSHQYVSTST AFQFCGLPSL SLPIDNHAED 60 KAMAASKSHS QAEKRRRDRI NAQLATLRKL IPKSDKMDKA ALLGSVIDQV KDLKRKAVEV 120 GKSLIVPTEV DEIIIESDLS DEDVNVMNLT NKKSSKSDNN IYIRASVCCD DRPELFSELI 180 QVLKGLRLTP VRADVASIGG RIKSVLILCS KDHAQEAVSI NTLKQSLKLV LSKIASESMA 240 SNCRIRSKRQ RFFLPSCNQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105437.1	0.0	transcription factor bHLH51
TrEMBL	W9RZG0	0.0	W9RZG0_9ROSA; Uncharacterized protein
STRING	XP_010105437.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-49	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21393220