PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105237.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 872aa    MW: 96355.8 Da    PI: 8.1784
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105237.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.27.1e-21781860186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W  +evl+Li++r e+++++   k +++lWee+s+ + + g+ rsp qCk++w +l ++y++ k g++       +++pyf++++
  XP_010105237.1 781 KWRPEEVLKLIQMRGELHSQFLVVKGRMALWEEISRELVADGIDRSPGQCKSRWASLVQEYEESKSGNNH------KNWPYFEEMN 860
                     7*******************************************************************97......58*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.102.3E-67102352IPR001279Metallo-beta-lactamase
SuperFamilySSF562813.65E-71103517IPR001279Metallo-beta-lactamase
SMARTSM008499.4E-23115312IPR001279Metallo-beta-lactamase
PfamPF127066.7E-11127262IPR001279Metallo-beta-lactamase
PfamPF075211.0E-5458489IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.687774838IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-6774839IPR009057Homeodomain-like
SMARTSM007170.0024778840IPR001005SANT/Myb domain
PfamPF138371.9E-17779861No hitNo description
CDDcd122031.06E-20780845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MELELLGGFS SLSSYSSAYR PLVSPRMAAL GSLSLCPCSL LWRPKLTKRS FSCSVGSPSS  60
VGTPGSSAPR KRTGRKEGPK KSMEDSVQRK MEQFYEGRDG PPIRVLPIGG LGEIGMNCML  120
VGNYDRYILI DAGVMFPGYD ELGVQKIIPD TTFIKRWSHK IEAVVITHGH EDHIGALPWV  180
IPALDSKTPI FASSFTMELI KKRLKENGIF VPSRLKVFRT KRKFVAGPFE IEPIRVTHSI  240
PDCCGLVLRC SDGTIFHTGD WKIDESPLDG KVFDRETLEE LSKEGVTLMM SDSTNVLSPG  300
RTMSESVVAD SLMRHISAAK GRVITTQFAS NIHRLGSVKA AADATGRKLV FVGMSLRTYL  360
DAAFKDGKAP IDPSTLVKVE DIDAYAPKDL LIVTTGSQAE PRAALNLASY GSSHSLKLTK  420
EDIILYSAKV IPGNESRVMD MLNRLAEIGS TIVMGKNEGL HTSGHGYRGE LEEVLQLVKP  480
QHFLPIHGEL LFLKEHELLG RSTGIRHTTV IRNGEMLGVS HLKNRRVLSN GFTFLGKENL  540
QLKYSDGDKA FGTSSELCVD ERLKIALDGI IVVSMEILRP QNVNGLFENT LKGKIRITTR  600
CLWLDKGKLL DALHKAAHAA LSSCPVNCPL NHMERTVSEV LRKLVRKYSG KRPEVIAIAL  660
ENPTAVISDE VNARLSGKAH VGFEVSALRK LVDGRPSKSV ELEGLLSEEE TTTTSFNSDT  720
IPADSEEFLK SFGTVFPVDE VVKENNGSIL SQEHIPELEE EGNESVEMPA SKPKKPAKRN  780
KWRPEEVLKL IQMRGELHSQ FLVVKGRMAL WEEISRELVA DGIDRSPGQC KSRWASLVQE  840
YEESKSGNNH KNWPYFEEMN KVLSDSEAVA AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-8310366119560RIBONUCLEASE J
5a0t_B2e-8310366119560RIBONUCLEASE J
5a0v_A2e-8310366119560RIBONUCLEASE J
5a0v_B2e-8310366119560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105237.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295890.0KP229589.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB33) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027151.10.0uncharacterized protein LOC21385762 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLW9SFE70.0W9SFE7_9ROSA; Ribonuclease J
STRINGXP_010105237.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]