PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105229.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

YABBY

Protein Properties

Length: 195aa MW: 22059 Da PI: 8.4116

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105229.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.9	1.5e-67	6	167	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast.svs 97 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q l+ +++ + + + ++ + n+ + + + s+s+ +v+ XP_010105229.1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSLSWQQDH------HHHLQAQNYNYNVPDYRIDSGSSSRcNVN 94 5689******************************************999999988761......11222223333444444444433331444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl XP_010105229.1 95 KLAMRAPNANNVSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 167 45667888889999899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-71	8	167	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-7	112	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-4	115	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSSCVDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQQDHHHHLQ AQNYNYNVPD YRIDSGSSSR CNVNKLAMRA PNANNVSEER VVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLK TNNQTKLDNG 180 SEKHLMPSRA ANALM

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105229.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	9e-64	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105229.1	1e-145	axial regulator YABBY 5
Swissprot	Q8GW46	4e-82	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	W9RQQ7	1e-144	W9RQQ7_9ROSA; Uncharacterized protein
STRING	XP_010105229.1	1e-145	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-84	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	21395565

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]