PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105103.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 382aa    MW: 42935.4 Da    PI: 7.3908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105103.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12190236455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++ErrRR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  XP_010105103.1 190 EHIMAERRRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIKYVKELQ 236
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.637186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-11191237No hitNo description
SMARTSM003531.8E-13192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDVASAKWLS ELGLDQDYSS SFFHKSEMNS LNQFGFISEE VATALGEDYK QSFSSESYSS  60
YSTITTKNPS NAASSGSDYS VKDSQVSFDR PPKQLKISGS PSSQLILSFE NSNSSPTRPQ  120
RHVYGNFEST LRPKKEAASQ IDHVPYFSSV VTKDHSVLNG DNIDSAPKTS IKGTKRSFSS  180
MTRTPSHAQE HIMAERRRRE KLSQRFIALS AILPGLKKMD KASVLGDAIK YVKELQERMK  240
TLEEQNKKRT VESVVFVKKS QLMISSTDDD TSSSNDSHDS HSDEVLLPEI EARVSEKDVL  300
IRIHCEKQKG FMVKMLSEIE KLHLSIVNTS VLPFGNSTFD ITVIAQDEPL YKELAIKLME  360
NEFNMTVKDL VKNLRQALLK FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13191236954Transcription factor MYC2
5gnj_B1e-13191236954Transcription factor MYC2
5gnj_E1e-13191236954Transcription factor MYC2
5gnj_F1e-13191236954Transcription factor MYC2
5gnj_G1e-13191236954Transcription factor MYC2
5gnj_I1e-13191236954Transcription factor MYC2
5gnj_M1e-13191236954Transcription factor MYC2
5gnj_N1e-13191236954Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180TKRSFSSM
2194199ERRRRE
3195200RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027042.10.0transcription factor bHLH18
TrEMBLW9RQM60.0W9RQM6_9ROSA; Uncharacterized protein
STRINGXP_010105103.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-63bHLH family protein