PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105102.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 380aa    MW: 42816.6 Da    PI: 6.6791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105102.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13203249455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++ErrRR+++N+++  L  ++P +     kK++Ka++L  A+ YIk Lq
  XP_010105102.1 203 DHVIAERRRREKLNQRYIALSAVVPGL-----KKMDKASVLGDAITYIKTLQ 249
                     6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-11203249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17203260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17204263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-13204253No hitNo description
SMARTSM003532.1E-14205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEIPSAKWLS ELEMDYNFFH QYDQVNSLDH HYSFDDINFQ SFSSESYSSH NTNFAPANSQ  60
NLGGAATPVD QAPHHQITDF ESRPAKQLKI NNSWNNNNSC TTNDNYHYHK TSAKAASSSS  120
SQIISFEKYA SSAATTPEKY YDNLDQSPVK QPKDEPAGST DKYMIFQSSY HDRNENFSPK  180
LGQVIREKRP AAAMSRSPLH AQDHVIAERR RREKLNQRYI ALSAVVPGLK KMDKASVLGD  240
AITYIKTLQE RVSILEEQAA KKTVESVVFV KRSHLSADDE ISSSDENFDS SSDQPLPEIE  300
ARVSGKDVLI RIHCEKQKGC LSNILCEIEK LHLTIVNSSV LPFGGSTTHI TIVAQMDVEY  360
SMNAKDLVRN IRQALLKNYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13203258863Transcription factor MYC2
5gnj_B2e-13203258863Transcription factor MYC2
5gnj_E2e-13203258863Transcription factor MYC2
5gnj_F2e-13203258863Transcription factor MYC2
5gnj_G2e-13203258863Transcription factor MYC2
5gnj_I2e-13203258863Transcription factor MYC2
5gnj_M2e-13203258863Transcription factor MYC2
5gnj_N2e-13203258863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERRRRE
2208213RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105102.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105102.10.0transcription factor bHLH18
SwissprotQ9T0721e-62BH025_ARATH; Transcription factor bHLH25
TrEMBLW9RQB00.0W9RQB0_9ROSA; Uncharacterized protein
STRINGXP_010105102.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-58bHLH family protein