PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105043.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

SRS

Protein Properties

Length: 474aa MW: 48130 Da PI: 7.6636

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105043.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.7	1.3e-67	259	420	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass.kaaasaaeaaskrkrelkskkqsalsstklssaes 96 s ta+CqdCGnqakkdC+h+RCRtCCksrgf+CathvkstWvpaa+rrerq ++ a ++ +s +++ +k++r +++++++s+t++s++++ XP_010105043.1 259 SSTATCQDCGNQAKKDCTHRRCRTCCKSRGFECATHVKSTWVPAARRRERQLMNVAGAAvGPGSSGSTSGAKKPRL-FASQTTTTSHTSTSNTTP 352 57899*******************************************98776655505555557788888886.588999999***** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e XP_010105043.1 353 PRSFDTSSshqdvgykdsLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVEP 420 **999******************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-62	261	419	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.8E-27	263	305	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.3E-30	371	418	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MEIYMKIDDE TERSHVTLES PRSSVVATTR RLPSDSGAFA DWVASSSSAA AAAAAAAAAA 60 AGRGASVPDE LSLGFNAGPT GGGGGPASSS SSALWAGSSR PINYGLPPEM GMVGLRDVFV 120 VAPASSFHHP NHHHHHHHHA DPYLIADHHS LNGSNPATAL GVGVGVGVIP LLTATPCLGP 180 VDDDSANALG GSTASRGRSG GGGGSGVAGG VGGGIQLWQN QQNQQHFFKK PGINILDQGI 240 NPNLVQSGGG GGVIGSGSSS TATCQDCGNQ AKKDCTHRRC RTCCKSRGFE CATHVKSTWV 300 PAARRRERQL MNVAGAAVGP GSSGSTSGAK KPRLFASQTT TTSHTSTSNT TPPRSFDTSS 360 SHQDVGYKDS LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKIGGHVFK GFLYDQGVEP 420 KEGFPNISEL HLGGGGGGRN GASSSSPLLD PSDVYAASTG GGLLGGSGYG NQIN

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MEIYMKIDDE TERSHVTLES PRSSVVATTR RLPSDSGAFA DWVASSSSAA AAAAAAAAAA  60
AGRGASVPDE LSLGFNAGPT GGGGGPASSS SSALWAGSSR PINYGLPPEM GMVGLRDVFV  120
VAPASSFHHP NHHHHHHHHA DPYLIADHHS LNGSNPATAL GVGVGVGVIP LLTATPCLGP  180
VDDDSANALG GSTASRGRSG GGGGSGVAGG VGGGIQLWQN QQNQQHFFKK PGINILDQGI  240
NPNLVQSGGG GGVIGSGSSS TATCQDCGNQ AKKDCTHRRC RTCCKSRGFE CATHVKSTWV  300
PAARRRERQL MNVAGAAVGP GSSGSTSGAK KPRLFASQTT TTSHTSTSNT TPPRSFDTSS  360
SHQDVGYKDS LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKIGGHVFK GFLYDQGVEP  420
KEGFPNISEL HLGGGGGGRN GASSSSPLLD PSDVYAASTG GGLLGGSGYG NQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105043.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026981.1	0.0	protein LATERAL ROOT PRIMORDIUM 1, partial
Swissprot	Q94CK9	1e-96	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	W9RQF7	0.0	W9RQF7_9ROSA; Uncharacterized protein
STRING	XP_010105043.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-72	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Entrez Gene	21384690

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]