PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 744aa MW: 83035.9 Da PI: 4.3737 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.8e-52 | 9 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+e+d++k ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ XP_010104895.1 9 LPLGFRFRPTDEELINHYLRLKINGRNADV-HVIPEIDVCKREPWDLPrQsVIKTDDPEWFFFCPRDRKYPNGQRSNRATDAGYWKATGKDRTIR 102 699************************999.99**************96347777888************************************* PP NAM 94 sk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 s+ ++ l+g+kktLvfy+grapkge+t+W+mheyr XP_010104895.1 103 SRsyrsasnTNGLIGMKKTLVFYRGRAPKGERTNWIMHEYR 143 *988776655556***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-60 | 6 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 9 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MGTVSLESLP LGFRFRPTDE ELINHYLRLK INGRNADVHV IPEIDVCKRE PWDLPRQSVI 60 KTDDPEWFFF CPRDRKYPNG QRSNRATDAG YWKATGKDRT IRSRSYRSAS NTNGLIGMKK 120 TLVFYRGRAP KGERTNWIMH EYRPTLKDLD GTGPGQEAFV LCRLFRKPEE KSDALKHDEV 180 NQTGSSPTIT KSSPDDTSSD LLQETAPSDM PIGEEPEVIN RWSTEKLDIM IARAPGPVES 240 GSNSNMASDV EDHATDQETP REVHMQMEEN SQLYEPANDE IDFSSFSPFQ SIDLGPELLY 300 VGSPSDFGND INGFRFMDGT GEQDISISEL LDEVLQNPDE SSCEDSTYQK NTVVGRDNHL 360 SNLTQSLQNT QPGNLYNVSY NNMNPQTMQH GLDMKGSEWY SEQMDAKEVL QIQPQCGPSR 420 AEAPYANQDL RMGNMGQPGY NMVGQVSVNN LEESTSMNVP VNYYGHGGGT GIKIRSRQPQ 480 RPISDNFVTQ GTAARRIRLQ MDLSPGSTTN DNVRDSNQSY EEEVQSTHTG VSEATEWSPT 540 VDGQEKEYSR GHLAAGTGIK MRTRQQPQSS SNSPIPQGSA PRRIRLQMDT APRSFANDNV 600 KDVKQSKEED EDELQSTVTE DSLEDADDSE TDDEAQSSST EAPEATERSH FLDERDNESH 660 LLKADTIKEI AEESSIELID ESEDSSEESS AELVEANHKV CEKSTTKLSD FLSSVVPNPY 720 LCTTTTVAVN PSLITIGCGS MTRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-44 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-44 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-44 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-44 | 8 | 167 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-44 | 8 | 167 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-44 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-44 | 8 | 167 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104895.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026857.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | W9RPS1 | 0.0 | W9RPS1_9ROSA; NAC domain-containing protein 78 | ||||
STRING | XP_010104895.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13625 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-134 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406845 |