PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010104136.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 224aa MW: 24539.7 Da PI: 5.9809

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010104136.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.1	3e-43	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_010104136.1 46 PCAACKILRRRCADKCVLAPYFPPTEPSKFTIAHRVFGASNIIKFLQELPESQRSDAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLA 140 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010104136.1 141 KTQAE 145 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.511	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-43	46	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MECSTETNTT TTTNSSNMVG SQTPSSSSSP PQTPPPPPTP PVVISPCAAC KILRRRCADK 60 CVLAPYFPPT EPSKFTIAHR VFGASNIIKF LQELPESQRS DAVSSMVYEA SARIRDPVYG 120 CAGAICQLQK QVNELQAQLA KTQAELVNMQ CQQANLVALL CMEMAQSQQG SYHDISPHQH 180 HQQTLDGFNN NITTPLMMTG NQNNNNLSFL DDNNLGSLWE PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-45	38	153	3	118	LOB family transfactor Ramosa2.1
5ly0_B	9e-45	38	153	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010104136.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104136.1	1e-167	LOB domain-containing protein 1
Swissprot	Q9SK08	3e-76	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	W9SCB7	1e-165	W9SCB7_9ROSA; Uncharacterized protein
STRING	XP_010104136.1	1e-166	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	3e-73	LOB domain-containing protein 11

Link Out ? help Back to Top
Entrez Gene	21397562