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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 22425.1 Da PI: 5.3308 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.9 | 3.9e-40 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++kv+ +++ +vi+++d+y ++Pw+L+ k+ +e+++wyf+s++ +nr+t++gyWk g +++v+ + XP_010103879.1 8 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLDLYPYDPWELDGKALGEDNKWYFYSRK--------TQNRVTNNGYWKPLGVEEAVIGR 93 79*************************999.99**************977778999*****997........469****************9998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ap+g kt+W+mhe++l XP_010103879.1 94 sGNKKVGTKKYLVFYVGEAPSGMKTNWIMHEFHL 127 68889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-50 | 6 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.792 | 8 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-24 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGDSNVNLPP GFRFYPTDEE LVVHFLHRKV SLLPCHPDVI PDLDLYPYDP WELDGKALGE 60 DNKWYFYSRK TQNRVTNNGY WKPLGVEEAV IGRSGNKKVG TKKYLVFYVG EAPSGMKTNW 120 IMHEFHLSDS ASTSSTTSSS TRSSKRRAPK KIDTSKWVLC RVYERDEDHD DGTELSCLDE 180 VFLSLDDLDE ISLPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-41 | 4 | 166 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-41 | 4 | 166 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-41 | 4 | 166 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-41 | 4 | 166 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-41 | 4 | 166 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-41 | 4 | 166 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-41 | 4 | 166 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103879.1 | 1e-145 | NAC domain-containing protein 104 isoform X1 | ||||
Swissprot | Q8GWK6 | 3e-83 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | W9RXQ8 | 1e-143 | W9RXQ8_9ROSA; NAC domain-containing protein 68 | ||||
STRING | XP_010103879.1 | 1e-144 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 4e-82 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406929 |
Publications ? help Back to Top | |||
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