PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 366aa MW: 39903.9 Da PI: 7.6942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010103498.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010103498.1 147 YECKTCNRTFPSFQALGGHRASH 169 99**********99999998887 PP
2	zf-C2H2	13	0.00031	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_010103498.1 240 HECSICGAEFTSGQALGGHMRRH 262 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.5E-13	146	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-7	146	169	No hit	No description
SMART	SM00355	0.052	147	169	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	147	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-7	235	262	No hit	No description
Pfam	PF13912	5.5E-13	239	264	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.827	240	267	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	240	262	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEATAQEEVN PTSKDHTVVA KGKRTKRQRP QSPMPFAAVA AATNSYGGEY NNNHHNSNSN 60 NSNNSSSPTT SAELQDISTE EEEDMANCLI LLAQGRFRGR SATPTKALPP IVIDTEDGSG 120 SAFKYSSRKF LEATNAPGAG RAGYYVYECK TCNRTFPSFQ ALGGHRASHK KPKAMAEIEK 180 KTQLFALQSD DEDQLQLTKS NHNTISSTTL SLQLNNRSLY GISHNNNNHH ITNKSPNKVH 240 ECSICGAEFT SGQALGGHMR RHRAPAGTVA ATAAAATALS LSTVSATPLM ALEAHEDDHQ 300 QQHTKKARNV LSLDLDLNLP APEDDQRDSK FGFVTSKQQQ QQQQQQQQQQ QSSLVFSAPA 360 LVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEATAQEEVN PTSKDHTVVA KGKRTKRQRP QSPMPFAAVA AATNSYGGEY NNNHHNSNSN  60
NSNNSSSPTT SAELQDISTE EEEDMANCLI LLAQGRFRGR SATPTKALPP IVIDTEDGSG  120
SAFKYSSRKF LEATNAPGAG RAGYYVYECK TCNRTFPSFQ ALGGHRASHK KPKAMAEIEK  180
KTQLFALQSD DEDQLQLTKS NHNTISSTTL SLQLNNRSLY GISHNNNNHH ITNKSPNKVH  240
ECSICGAEFT SGQALGGHMR RHRAPAGTVA ATAAAATALS LSTVSATPLM ALEAHEDDHQ  300
QQHTKKARNV LSLDLDLNLP APEDDQRDSK FGFVTSKQQQ QQQQQQQQQQ QSSLVFSAPA  360
LVDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010103498.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103498.1	0.0	zinc finger protein ZAT5
TrEMBL	W9RU53	0.0	W9RU53_9ROSA; Zinc finger protein ZAT5
STRING	XP_010103498.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-73	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21400029