PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103154.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 324aa    MW: 36552.4 Da    PI: 7.0592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103154.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_010103154.1 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9182216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-13252311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.35E-13263307No hitNo description
PfamPF139201.7E-8263304No hitNo description
SMARTSM001841.6E-4264301IPR001841Zinc finger, RING-type
CDDcd001622.43E-8264305No hitNo description
PROSITE profilePS5008910.527264302IPR001841Zinc finger, RING-type
PROSITE patternPS005180279288IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADSDEKPQT EQVCNFFRKP SKNKNIRKRT VTEDDDEESK TESTVLHSQK KAPKPDNKLY  60
FSTGPSKNSA SAESNAASET PVFQFESSKE IQVQHDSRAT ATLETETEFS KDARAIRERV  120
LKNADAALKG KGKNTGDEKL YTGIHGYTDY KAGFRREQTV ASEKAGGSHG PLRASAHIRA  180
TTRFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ LEKEWEEAEK VRKRNLALGG  240
ADSDEGGADQ NDDDDDDDAL PFACFICRQP FVDPVVTKCK HYFCEHCALK HHSKNKKCFV  300
CNTPTLGIFN TAHEIRKKMA EDRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-641032311321RING finger protein 113A
5z58_M7e-641032311321RING finger protein 113A
6ff4_t7e-641032311321RING finger protein 113A
6ff7_t7e-641032311321RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103154.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025696.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025697.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025698.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-171C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK450.0W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010103154.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-161C3H family protein