PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010103039.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 261aa MW: 28249.3 Da PI: 9.8439

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010103039.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.6e-11	71	117	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P + +K++Ka+ L +++ +k+L XP_010103039.1 71 KNHSEAERRRRERINAHLSTLRGLVPCN-----GKMDKATLLAEVILQVKEL 117 58***********************9.....9******9998766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.212	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-9	71	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-12	72	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	6.14E-4	158	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDSYSFSGSG RSGLFDPFSS SSSGGGFVVN GGPTGISQSL VLDGKKGELV KAPARVGKKG 60 ISEAKALAAL KNHSEAERRR RERINAHLST LRGLVPCNGK MDKATLLAEV ILQVKELKKN 120 AAEASKGLLI PMDADQVHVE PYNNNRAVGD RTPAFKASLC CGYRPELLSD IRQALDALPV 180 KMVRTEISTL GERLKILFVF TYCKDKNSDD AETCRNIAIS VQEILSSILD KASALAEYSP 240 RTMLPGKKRR FSYFDSSSSS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	81	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010103039.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103039.1	0.0	putative transcription factor bHLH107
TrEMBL	W9RSY7	0.0	W9RSY7_9ROSA; Uncharacterized protein
STRING	XP_010103039.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8986	31	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-30	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21389249