PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010102841.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bZIP

Protein Properties

Length: 310aa MW: 34876.8 Da PI: 9.0607

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010102841.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.5e-10	23	62	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le+ L++ ++ XP_010102841.1 23 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQE 62 788*************************976666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	19	66	No hit	No description
SMART	SM00338	4.9E-9	19	90	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.427	21	65	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.38E-7	23	66	No hit	No description
Pfam	PF00170	9.5E-7	23	62	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	26	41	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-30	108	179	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MQQGTLAVVD SMEQAKGKTG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE NSRLRLSQLE 60 QELQRARQQG MFIASGFSGD HNQLMVGNGA LTFDLDYTRW LDENQRLVND LRSAVNSHMG 120 DNELHVLVDG VMSHYDELFR LKTIGAKADV FHMLSGMWKT PAERCFMWLG GFRSSEVLKG 180 ILGNHLEPLT DQQLMGICNL QQSSQQAEDA LSQGMEALQQ SLVETLSSTT LGPAGSGNVA 240 DYMGQMAIAM GKLATLENFL YQADLLRQQT LQQMHRILTT RQAARALLVI SDYFSRLRAL 300 SSLWLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010102841.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025514.1	0.0	transcription factor PERIANTHIA
Swissprot	Q9SX27	1e-166	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	W9S8H4	0.0	W9S8H4_9ROSA; Transcription factor PERIANTHIA
STRING	XP_010102841.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-142	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	21391255

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]