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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 92612 Da PI: 6.2125 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.2e-19 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_010102406.1 25 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 5679*****************************************************97 PP | |||||||
2 | START | 177.9 | 5.9e-56 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++ +s+g g+++l XP_010102406.1 169 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVINMLSTGngGTIELL 262 7899******************************************************.8888888888************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+l Sg+li+p+++g+s +++v+h+dl+ ++++++lr+l+ XP_010102406.1 263 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLSSGYLIRPCEGGGSIIHVVDHIDLEPWSVPEVLRPLY 357 *******************************************9988899********************************************* PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 ks++ ++kt++a+l+++++ XP_010102406.1 358 KSSTLLAQKTTTAALRHLRQ 377 ***************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.726 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 24 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.07E-17 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.53E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 25.829 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 1.24E-78 | 163 | 378 | No hit | No description |
SuperFamily | SSF55961 | 4.67E-38 | 168 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.4E-22 | 168 | 373 | IPR023393 | START-like domain |
SMART | SM00234 | 2.7E-42 | 168 | 378 | IPR002913 | START domain |
Pfam | PF01852 | 8.2E-54 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 1.4E-52 | 703 | 843 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MAVTAGSGCK EGGSKSSSIA MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLSAM NKLLMEENDR LQKQVSQLVY 120 ENTYFRQQTQ NAPLATTDTS CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK 180 ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR 240 DCRAVDVINM LSTGNGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVVCERSLN 300 NTQNGPSMPP VQNFVRAEML SSGYLIRPCE GGGSIIHVVD HIDLEPWSVP EVLRPLYKSS 360 TLLAQKTTTA ALRHLRQISQ EVSQPNATGW GRRPAALRAL SQKLSKGFNE AVNGFTDEGW 420 TMLESDGIDD VTLLVNSSPS KMMGMNLPYA NGFPSASNSV LCAKASMLLQ NVPPAILLRF 480 LREHRSEWAD SNIDAYSAAA IKAVPCSLPV PRAGSFGGQV ILPLAYTIEH EEFMEVIKLE 540 NMGHYQDDMI MPVDIFLLQL CSGVDENAVG TCAELIFAPI DASFSDDAPI LPSGFRIIPL 600 DSGVDAPSPN RTLDLASALE VGHTGNRTSG DNAGNSGNRK SVMTIAFQFA FEMHLQESVA 660 AMARQYVRSI IASVQRVALA LSPSGFGSNV GLRPPPGTPE AQTLARWICQ SYRCYLGVEL 720 LKNEGSESIL KSLWHHSDAV LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD 780 NGRKTLCSEF PQIMQQGFMC LQGGICMSSM GRPISYERAV AWKVLNEEES AHCICFMFIN 840 WSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102406.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102406.2 | 0.0 | homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | W9S776 | 0.0 | W9S776_9ROSA; Homeobox-leucine zipper protein ATHB-8 | ||||
STRING | XP_010102406.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Entrez Gene | 21394007 |