PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102352.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YA
Protein Properties Length: 349aa    MW: 38338.8 Da    PI: 6.9584
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102352.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32173229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+RgsgGrF
  XP_010102352.1 173 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 229
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-35171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.056172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-28174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRSKSQNTDG LGLDSHTITP TNVYSEPWWR NVGYNPISPP LTVRNASNSS SLDCPNGASE  60
SNEDQSLSDD GPNEEDDDAT KDSYVSASPR SGNYGQDQIM QHVSSTMPTL HDEHLTQPPQ  120
LELVGHSIAC ASNPYQDPYY GGMMTVYGHQ PLGYPPFFGM PQARMPLPLE MAQEPVYVNA  180
KQYQGILRRR QARAKAELEK KLIKVRKPYL HESRHQHAMR RARGSGGRFA KKTDGDASND  240
AEKEKGSGSG RAHSSMSACS SGSEPLASDS NETWNSSNGQ HEARGSQVHG TYTAHNYVNG  300
NSCYQNHGGM QDSKYHLRPS ERAEEGDCSG QQRGSLSANQ ASHRRLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-19173237266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1506850.0KR150685.1 Morus alba nuclear transcription factor Y subunit A-1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102352.10.0nuclear transcription factor Y subunit A-1
RefseqXP_024025217.10.0nuclear transcription factor Y subunit A-1
RefseqXP_024025218.10.0nuclear transcription factor Y subunit A-1
RefseqXP_024025219.10.0nuclear transcription factor Y subunit A-1
SwissprotQ9LXV51e-89NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLW9RR190.0W9RR19_9ROSA; Nuclear transcription factor Y subunit A-1
STRINGXP_010102352.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-90nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]