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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102188.1 | ||||||||
Common Name | DREB2D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22062.2 Da PI: 5.34 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 42 | 90 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a++ a+ kl+g XP_010102188.1 42 FIGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSTEAALAYDDAATKLYG 90 78***999.**********8...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.65E-27 | 40 | 99 | No hit | No description |
PROSITE profile | PS51032 | 20.415 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-20 | 41 | 99 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-31 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-12 | 42 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-28 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEDREKDQTA KAVVKAARPV MERSRKRRMK GKGGPENAEC TFIGVRQRTW GKWVAEIREP 60 NRGARLWLGT FNTSTEAALA YDDAATKLYG TSAKLNLPDR HHRLEPSSAA NQDAGSRLQP 120 LVMDNGFTTT SSSTTATNVN HDDDDNNNNI NNNNNNNMPI FGWPEICQVG SEDFGVLFGG 180 EDDQFVDSNN IGFPSPWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-17 | 42 | 100 | 6 | 65 | ATERF1 |
3gcc_A | 8e-17 | 42 | 100 | 6 | 65 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 28 | SRKRRM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102188.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF678390 | 0.0 | KF678390.1 Morus notabilis dehydration responsive element binding transcription factor (DREB2D) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102188.1 | 1e-148 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | W6FHL3 | 1e-146 | W6FHL3_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010102188.1 | 1e-147 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 5e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21407208 |