PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102066.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 94aa    MW: 10904.3 Da    PI: 8.8963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102066.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09550346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ +
   XP_010102066.1  5 TWTAKQNKLFENALAIYDKDspdRWHNLARAVG-GKTVEEVKRHYEM 50
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.105156IPR017884SANT domain
SMARTSM007171.0E-7254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5558IPR009057Homeodomain-like
PfamPF002493.8E-6551IPR001005SANT/Myb domain
CDDcd001671.56E-6552No hitNo description
SuperFamilySSF466894.91E-13659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSTWTAKQ NKLFENALAI YDKDSPDRWH NLARAVGGKT VEEVKRHYEM LVEDVNKIEA  60
GEVPLPNYRK IGANNKAYNS FMDEEQRLRN LKLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-356941193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102066.14e-65protein RADIALIS-like 3
SwissprotQ1A1735e-38RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLW9RQB49e-64W9RQB4_9ROSA; DnaJ homolog subfamily C member 2
STRINGXP_010102066.11e-64(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-40RAD-like 6