PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101418.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-X1
Protein Properties Length: 870aa    MW: 96890.3 Da    PI: 8.3527
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101418.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.8e-06190208120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG H+C  lCH+GpCp+Cp+
  XP_010101418.1 190 CG-HRCLLLCHPGPCPSCPK 208
                     **.***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.42E-575152No hitNo description
PROSITE patternPS01359077143IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.97E-6178226No hitNo description
PfamPF014220.0016190207IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012190208IPR000967Zinc finger, NF-X1-type
CDDcd060081.08E-8232280No hitNo description
SMARTSM004380.011242261IPR000967Zinc finger, NF-X1-type
PfamPF014220.0041245260IPR000967Zinc finger, NF-X1-type
CDDcd060082.32E-8286329No hitNo description
PfamPF014220.22296314IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034296315IPR000967Zinc finger, NF-X1-type
CDDcd060083.92E-8340385No hitNo description
PfamPF014220.016350369IPR000967Zinc finger, NF-X1-type
SMARTSM004380.12350370IPR000967Zinc finger, NF-X1-type
CDDcd060086.19E-11384430No hitNo description
PfamPF014220.0032386410IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0069392411IPR000967Zinc finger, NF-X1-type
SMARTSM0043814449470IPR000967Zinc finger, NF-X1-type
PfamPF014222.8459469IPR000967Zinc finger, NF-X1-type
PfamPF0142231478487IPR000967Zinc finger, NF-X1-type
SMARTSM0043883478523IPR000967Zinc finger, NF-X1-type
PfamPF014221.8560570IPR000967Zinc finger, NF-X1-type
SMARTSM0043819560593IPR000967Zinc finger, NF-X1-type
CDDcd060084.24E-5591632No hitNo description
PfamPF014220.061603620IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0044603621IPR000967Zinc finger, NF-X1-type
SMARTSM004386666687IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MLSPIDHRPD HPPISDSDAD SDDGRPESQR ARHADLSASI FRAYFEFSGR SSSATTPTDL  60
SKIQSFLTSS SSGALSCLIC LERIRPSDPT WSCTSLCFAV FHLLCIQSWA RQASDLAALR  120
ASTRLPIDPG KASELSLWNC PKCRSDYSKS HIPKTYLCFC GKLENPPSDD PWILPHSCGE  180
VCDRPLKHGC GHRCLLLCHP GPCPSCPKLV KSRCFCGSIE DVRRCGFKNF SCNNVCSKLL  240
DCRAHRCSEI CHEGPCPLCR VRGMYRCQCG KREEEKECCD RVNYRCNNPC EKMLGCRRHV  300
CEKGCHSGEC GPCPFQGKGS CPCGKRVYEG MACDVDVPLC GGTCDKMLSC GFHRCPERCH  360
RGSCIETCRI VVTKSCRCGS LKKEICGRKL RCKNHKCPSP CHRGPCAPCP VMVTISCACG  420
ETHFEVPCGT EMDQKPPRCA KRCPIIPLCR HRTNLKPHKC HYGDCPPCRL LCDEEYSCGH  480
KCNLWCHGPK PPPNPEFTLK PKKKKSVRQI EGTPGSPCPP CPELVWRSCI GQHIGAEKMM  540
VCSNRMQFSC ENLCGNLLPC SNHYCTKTCH ALKSLSSTSV QQAGSEPCED CNLPCEKERA  600
PACSHPCPLT CHPGDCPPCK VLVKRSCHCG SMVHVFECIY YNSLSEKEQM NVRSCGGPCH  660
RKLPNCTHLC PETCHPGQCP SPEKCSKKVS VRCGCQTLKK EWLCNDVQAA YRSAGSDPKD  720
ISKNQYGLGL IPCNSDCKSK IQVVESELRL RKSKVSEVKE PETEKHGPKR KRRRERVQET  780
KQISRLQRVA ATVKRLLLAV LLAVAVIAAL YYGYKGLLWL SDRMNEVDDQ RQRRKIRLTT  840
WLTGKIIDEV SGIANTERLA TKPSREDEVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1768773KRKRRR
2769773RKRRR
3822833RMNEVDDQRQRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101418.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLW9RFC80.0W9RFC8_9ROSA; NF-X1-type zinc finger protein NFXL2
STRINGXP_010101418.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors