PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010100715.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 173aa MW: 19816.8 Da PI: 6.5017

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010100715.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.8	8.7e-39	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C+l+pyfp e+ +kfa+vhk+FGasnv+k+++ l+ee+reda++++vyeA ar+rdPv G++g+i++lq+ +++l+++l+ XP_010100715.1 16 PCAACKMLRRRCDNNCALSPYFPTEEIEKFACVHKVFGASNVIKMIQMLEEERREDAVKAIVYEAMARVRDPVCGSAGIIFHLQKMVHELRSQLE 110 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ XP_010100715.1 111 TTTAQ 115 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-38	16	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
METGQVPLAR SRVNQPCAAC KMLRRRCDNN CALSPYFPTE EIEKFACVHK VFGASNVIKM 60 IQMLEEERRE DAVKAIVYEA MARVRDPVCG SAGIIFHLQK MVHELRSQLE TTTAQVSELR 120 AQRDQLQGIL MNAHVDPLFY AHNRTSQDDH QTIAYDPMMI SFPNLDQMEP FNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	14	129	9	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	14	129	9	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010100715.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010100715.1	1e-129	LOB domain-containing protein 1
Swissprot	Q9SK08	2e-39	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	W9RLJ3	1e-127	W9RLJ3_9ROSA; Uncharacterized protein
STRING	XP_010100715.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-42	LOB domain-containing protein 11

Link Out ? help Back to Top
Entrez Gene	21406245