PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100678.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 525aa    MW: 58415.7 Da    PI: 6.1572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100678.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.9e-12332377454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  XP_010100678.1 332 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 377
                     799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-5427219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17329390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-14331381No hitNo description
PfamPF000107.3E-10332377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16332390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEDLMISPSS SSSLISLSTH EASPPTLQQR LQFIVKSQPD WWAYAIFWQT SNDDNGRLFL  60
AWGDGHFQGV KDTISPINSN SSNNNNHYSA VSAGIHAERR KMLKGIQSLI NDNNLPDIDN  120
IMAINGDVTD AEWFYVMSLT RSFLAGDGVP GKAFSTGSLV WLTGVHELQF YNCERAKEAQ  180
MHGIETLVCI PTSTGVLELG SSEIIRENWC LVQQVKSLFG SDLYTNQNDT GPIQFLNGNI  240
SFADIGIIAG VQEEDKYSPD EIKKKETLDL MMMKKRKKKE GNSAYVDSEH SDSDCPLITV  300
NNNNNNNIST GEKRAPKKRG RKPGLGRDTP LNHVEAERQR REKLNHRFYA LRAVVPNVSR  360
MDKASLLSDA VSYINELKAK IDDLESQLQR DQSNKKVKLE AADTMSLDNQ STTTSVDQTK  420
PPNSNSSSNK SNNINSVTGN INGLEIEVKI IGTDAMIRVQ SENVNYPSAR LMGALRDLEF  480
QVHHASVSSI NDLMLQDVVV KIPEGIVLMR TQEGLKSALL RRLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-37262198192Transcription factor MYC3
4rqw_B8e-37262198192Transcription factor MYC3
4rs9_A8e-37262198192Transcription factor MYC3
4yz6_A8e-37262198192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262278KKKETLDLMMMKKRKKK
2273277KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100678.10.0transcription factor MYC2
TrEMBLW9RDL10.0W9RDL1_9ROSA; Uncharacterized protein
STRINGXP_010100678.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-50bHLH family protein