PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100271.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 1041aa    MW: 115044 Da    PI: 5.4978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100271.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-173783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_010100271.1 37 KGQWTPEEDEILGRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding66.45.1e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
   XP_010100271.1  89 KGPWSKEEDEIIVELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding47.83.3e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++ +G++ W+   + ++ gRt++++k++w+
   XP_010100271.1 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNSIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.373283IPR017930Myb domain
SMARTSM007175.9E-143685IPR001005SANT/Myb domain
PfamPF002493.0E-153783IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-153893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-243995IPR009057Homeodomain-like
CDDcd001675.36E-134083No hitNo description
PROSITE profilePS5129433.35784139IPR017930Myb domain
SuperFamilySSF466891.39E-3186182IPR009057Homeodomain-like
SMARTSM007171.1E-1988137IPR001005SANT/Myb domain
PfamPF002493.8E-1989135IPR001005SANT/Myb domain
CDDcd001673.25E-1791135No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2896139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-20140190IPR009057Homeodomain-like
PROSITE profilePS5129419.083140190IPR017930Myb domain
SMARTSM007171.1E-14140188IPR001005SANT/Myb domain
PfamPF002492.1E-13141184IPR001005SANT/Myb domain
CDDcd001672.41E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MESDRKTSNP LDGLGDNIQK IRALHGRTSG PTRRSTKGQW TPEEDEILGR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNSIKN  180
HWNSSVKKKL DSYLKSGLLT QFQGLPQVGH QNQPMLSSSM RIQSSGDSGP KGTEAEEISE  240
CSQESTVAGH FHSANEMANV VVHKREEFQS TEVSGSGKEP NSSPASCSEP YHPSLEDPAF  300
SMMEISNDIG CITKFLQQNF SHDGDCSISG DYQFDLHEIH NISSLEREPA GMHSHCLASN  360
EGHEMTNVPL QTSEEIAAST SMGNMIRLTG SDKPQIMLIS DDECCRVLFS EAMDNECFPS  420
GNLDLGGFTG PLLCQSSNIQ ISEDGAAASQ LHGPLSSNVT GTSFSQSFLC TQVSADDGPI  480
MVGGKSNHLF GVQEQDYATC SRDGFIFTND SANSPCDDGI DMTEMQEELD TVKAPSKLVP  540
VNSFCSRSDT QTCSTDAQPN VHKEEQDAGA LCYEPPRFPS FDVPFFSCDL VQSGGEMQQE  600
YSPLGIRQLM MSSMNCLTPF RLWDSPTRDG SPDAVLKSAA KTFTGTPSIL KKRHREFLSP  660
LSDRRNDKKL ETDMTSRLSK DFSRLDVMFD ACVVNKRSSQ SPSSKQNRDS SQVTEDEKKV  720
HKVNEGNKSE QECQKASDNT SPSGDRNSGK VVSNNEYQEN KEQGAADVDD KTKNAVNSTS  780
QPPSGVLTEH NMNDLQLFSP KQHDFRADKV FASISRTSRN HLKRFEPTPS KENPSKSSSG  840
KAIPFTSPSI SRKKVESLPV AETSAQHDPS SVLMETVGCT AGRDATIETF SIFGETPFKR  900
SIESPSAWKS PWFINSFVPG PRIDTDITIE DIGYLMSPGD RSYDAIGLMK QISEQTAAAY  960
ANAQEVLESG TPKTLLKEIF NRDTQEQDNN QQGTRSNMPQ NILAECRVLD FGECGTPGKG  1020
AEHGIAIGFS SPSSYLLKSC R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100271.10.0transcription factor MYB3R-1
RefseqXP_024023842.10.0transcription factor MYB3R-1
TrEMBLW9RKD70.0W9RKD7_9ROSA; Myb-related protein 3R-1
STRINGXP_010100271.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein