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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 506aa MW: 56243.7 Da PI: 6.7961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.4e-12 | 326 | 371 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L XP_010100202.1 326 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVVYINEL 371 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-41 | 29 | 215 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.869 | 322 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 323 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-13 | 325 | 375 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.0E-17 | 326 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-10 | 326 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-15 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MEEIISSCSS SSLVPISQQD HHQTKPTIQQ RLQFILQTRP EWWVYSIFWQ AYKDVTIGSK 60 GDVSLSWNGG YFRGTKNDVA RKGNDVVETV FGFDLEKKAS TTSRVGDIQA LFGNDSGQEM 120 DVDVLSDIEW FYTVSLSRTF AAESGAIGRS FSSGAYVWLT GSEELLLYEC ERVKEARMHG 180 IQTLVCIATP NGVLELGSSD LIKEDWSLVQ LAKSLLGSSG VPINNISPNI IQRQNSIQNQ 240 ISNIRDNFPL LDIGIMPSGS GRNESTLEDP NKQPEDIAKK HVVTGGSSSD SGPSDSDGYF 300 ASAITGGNRI KKRGRKPVIG NSLPVNHVEA ERQRREKLNH RFYALRSVVP NVSKMDKASL 360 LADAVVYINE LKSKINELET QVHLSQSNRP LKMGITMCNS TPKFESQSTY NIVEHKRKYS 420 SYGSVGAMEV DVKIVGTEAM IRVQCPDVNY PPARLMNALR DLEFQILHVS VSSVKELVLQ 480 DVVVRVPDRF PSEEAMRMAI VRLMQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-25 | 25 | 216 | 6 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-25 | 25 | 216 | 6 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-25 | 25 | 216 | 6 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-25 | 25 | 216 | 6 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100202.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | W9RC23 | 0.0 | W9RC23_9ROSA; Uncharacterized protein | ||||
STRING | XP_010100202.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 9e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21398450 |