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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TALE | ||||||||
Protein Properties | Length: 442aa MW: 48928.2 Da PI: 6.3908 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.5 | 2e-07 | 392 | 424 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + XP_010099875.1 392 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 424 69*****************************87 PP | |||||||
2 | ELK | 28.7 | 2.9e-10 | 345 | 366 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_010099875.1 345 ELKHELKQGYKEKIVDIREEIL 366 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.9E-20 | 179 | 223 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.3E-17 | 181 | 222 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.7E-28 | 232 | 287 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.1E-21 | 236 | 286 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 345 | 366 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.0E-6 | 345 | 366 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 345 | 365 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 365 | 428 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-11 | 367 | 432 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 367 | 430 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.49E-12 | 368 | 429 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 372 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-17 | 385 | 424 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MAYHNHLSQE LNALHHFADH QSQQQQSQST LEVLTSSAKS AEQHQPLQAA PNWLNNALLR 60 THAAHFDGAN GGGGGNNNNS SSHVNNSNNN NFLNLHTTAS DSRGGGGGGT SNQWLTRQIL 120 QRNHSDVIDT VGDTMIAAAM SHDSGEMKVG DAADSLNGKS ESGVVVESGD GGVMNWQNAR 180 YKAEILSHPL YDQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQNVVAKYSA LGQAMVSDDK 240 ELDQFMTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD 300 DEDDQVDSDA SLFDGSLDGP HDTMGFGPLI PTESERSLME RVRQELKHEL KQGYKEKIVD 360 IREEILRKRR AGKLPGDTTS VLKSWWQTHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN 420 QRKRNWHSNP STSTVLKSKR KR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 368 | 432 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 421 | 441 | RKRNWHSNPSTSTVLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099875.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023599.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X3 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | W9RB38 | 0.0 | W9RB38_9ROSA; Homeobox protein knotted-1-like 3 | ||||
STRING | XP_010099875.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21391897 |