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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 24036.2 Da PI: 7.568 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7e-20 | 52 | 106 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_010099829.1 52 KKRKLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 106 56699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 52 | 143 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+++ e++rLe+ev +L+e++++ XP_010099829.1 52 KKRKLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKMHDNVVVEKCRLESEVLQLKEQIMD 143 9***************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.584 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-18 | 50 | 111 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-18 | 52 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.38E-16 | 52 | 108 | No hit | No description |
Pfam | PF00046 | 3.5E-17 | 52 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-21 | 54 | 114 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MNNQIDEDHM ALISQLYPGV YTQMVPQQGE AKPRRRRRKN KSGEGGGCAA AKKRKLSSEQ 60 VNLLEMNFGN EHKLESERKD RLASELGLDP RQVAVWFQNR RARWKNKKLE EEYSTLKKMH 120 DNVVVEKCRL ESEVLQLKEQ IMDAKKEIQR LAERAEGVSS NSPSSSLSVE AVEPPFLGEF 180 GVVSEGYDNM FYAAENNYIH GMEWVNLYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 54 | RRKNKSGEGGGCAAAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099829.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099829.1 | 1e-154 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-87 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | W9RLH1 | 1e-153 | W9RLH1_9ROSA; Homeobox-leucine zipper protein ATHB-40 | ||||
STRING | XP_010099829.1 | 1e-154 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-83 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Entrez Gene | 21392390 |
Publications ? help Back to Top | |||
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