PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099677.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 475aa    MW: 52437.1 Da    PI: 5.7736
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099677.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.1e-1760104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
   XP_010099677.1  60 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 104
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1654107IPR009057Homeodomain-like
PROSITE profilePS5129421.62255109IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-957107IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1658107IPR006447Myb domain, plants
SMARTSM007172.8E-1359107IPR001005SANT/Myb domain
PfamPF002499.4E-1560103IPR001005SANT/Myb domain
CDDcd001672.47E-1162105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDGCDQNTYL AMQQSEGMEL KTSVVNGSKG DSKCESDNQM NEIYDTAPKV RKPYTITKQR  60
EKWTEEEHQK FLEALKLYGR GWRQIEEHVG TKTAVQIRSH AQKFFSKVVR GSTGTVESSI  120
KRIEIPPPRP KRKPVHPYPR KSAESFNGIL VSNQPERSPS PNLSAADKGT KSPTSVLSCQ  180
GSDALGSVAS GQHNRSPSSA SCTTDMNSIS QSPTEIENEY MIGNSSDEER RSLPAKHLSS  240
SLTLENLLSK KFELGAKDAS YTKEEEEEEE EEEEEAEVAA SASFKLFGRT VLLSGFQKES  300
PPGAKNSQTS KTDEGLVLTL SSDQLDTNLS LGGAVSNCNQ LEQPKESCNT ETANSPMLWW  360
TLYQFPFHYL AACNQTLDQT PRNSCSEHRE EDKDIPKERS STGSNDGSAS GVETAGDKNL  420
EAVDSFPQKP CTKVSVEPSN SRKGFVPYKR CLAERDNASA AVVPNVRERR KIRVC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016712e-60KM001671.1 Pyrus x bretschneideri transcription factor MYBR (MYBR) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023521.10.0protein REVEILLE 7 isoform X1
TrEMBLW9RAU00.0W9RAU0_9ROSA; Myb-like protein G
STRINGXP_010099677.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.22e-46MYB_related family protein