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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 430aa MW: 48512 Da PI: 4.3151 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.7 | 2.1e-10 | 29 | 78 | 2 | 50 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kk 50 ppG+rF P+deel+++yL +k +++ +e + +i+e+ + ++ P+++ + XP_010099580.1 29 PPGYRFAPSDEELIMYYLIPKSQDQIFEPNCIISEITLSDYTPEEIAeTD 78 9*************************999788*************97333 PP | |||||||
2 | NAM | 67.6 | 3.6e-21 | 100 | 210 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppG+rF P+deel+++yL +k +++ +e + +i+e+ + ++ P+++ +k+++gkr+nr + +gyW+ ++++v+s + XP_010099580.1 100 PPGYRFAPSDEELIMYYLIPKSQDQIFEPNCIISEITLSDYTPEEIA----------------VRKSNNGKRRNRLAGDGYWRLA-NTTDVYSDN 177 9*************************999788**************6................3566799******9*****976.55899999* PP NAM 97 gelvglkktLvfykg.rapkgektdWvmheyrl 128 g ++g k L f++ + k ektdW+mhe+++ XP_010099580.1 178 GVKIGSKSLLGFHRViPNVKEEKTDWIMHEFSV 210 *************876778889*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-10 | 22 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-5 | 29 | 57 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-26 | 93 | 243 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.692 | 99 | 243 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 100 | 209 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MEVSETDHNY DQMEGYRVEE TAVLNYYCPP GYRFAPSDEE LIMYYLIPKS QDQIFEPNCI 60 ISEITLSDYT PEEIAETDFN YDQMEGYRVE ETAVLNYYCP PGYRFAPSDE ELIMYYLIPK 120 SQDQIFEPNC IISEITLSDY TPEEIAVRKS NNGKRRNRLA GDGYWRLANT TDVYSDNGVK 180 IGSKSLLGFH RVIPNVKEEK TDWIMHEFSV LPSLDRKRKL TTLGEEDMLK LEDGYVLCQM 240 YKRGSTKTNK VLRRSNKNTE LQILPHNYVE TAPANLEYHA HDDHDQNSML LSKTPGRIDH 300 GALTLVETPP STSVSGENRN LGGLSSDAIL GAVPPTAAAD DGDELTAFLL KALDAEDYYY 360 AQLMENSLPT TATTSSSNIT DVSPQKANDK DLVLRGLEEV NQLISDFSNH ISTPIAPNWD 420 TATTSTTCCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-18 | 100 | 246 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-18 | 100 | 246 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-18 | 100 | 246 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-18 | 100 | 246 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-18 | 100 | 246 | 18 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-18 | 100 | 246 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099580.1 | 0.0 | NAC transcription factor 56 | ||||
TrEMBL | W9RKV4 | 0.0 | W9RKV4_9ROSA; NAC domain-containing protein 19 | ||||
STRING | XP_010099580.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 3e-22 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Entrez Gene | 21384394 |