PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GATA

Protein Properties

Length: 291aa MW: 31207.4 Da PI: 6.3038

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010099559.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.2	1.7e-16	202	238	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ XP_010099559.1 202 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 238 ***99999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.049	68	103	IPR010399	Tify domain
SMART	SM00979	1.1E-12	68	103	IPR010399	Tify domain
Pfam	PF06200	1.6E-13	71	102	IPR010399	Tify domain
Pfam	PF06203	1.0E-15	135	177	IPR010402	CCT domain
PROSITE profile	PS51017	12.6	135	177	IPR010402	CCT domain
SMART	SM00401	1.5E-16	196	249	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.04	196	256	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-12	198	247	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-15	201	243	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	3.2E-14	202	238	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.30E-16	202	249	No hit	No description
PROSITE pattern	PS00344	0	202	229	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MPNQIDDDDD VSAGVGGGAE SIDNPHIRYD ASHTLDDANG GVAGGGVVDD VGHDPVYAGA 60 GHELVVHRSD GSSQLTLSFR GQVYVFDAVT PDKVQAVLLL LGGCEISPGA QGVGIPNQNH 120 RGVVDIPVRC SQPQRAASLN RFRQKRKERC FDKKVRYSVR QEVALRMQRN KGQFTSKKSE 180 GAYGWGNSQD SGQDDNPPET LCTHCGISSK STPMMRRGPS GPRSLCNACG LFWANRGTLR 240 DLSKKTQDQP PTPAEQGEGD ASDSNCETTI RTHNNLVPFS NGDSSALMAE Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010099559.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099559.2	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	2e-92	GAT25_ARATH; GATA transcription factor 25
TrEMBL	W9RIJ4	0.0	W9RIJ4_9ROSA; GATA transcription factor 25
STRING	XP_010099559.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	8e-95	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Entrez Gene	21394817

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]