PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099556.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 379aa    MW: 41407.7 Da    PI: 4.7596
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099556.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.4e-16208244135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_010099556.1 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94270105IPR010399Tify domain
SMARTSM009794.2E-770105IPR010399Tify domain
PfamPF062003.9E-1073104IPR010399Tify domain
PfamPF062031.1E-14138179IPR010402CCT domain
PROSITE profilePS5101712.65138180IPR010402CCT domain
SMARTSM004012.5E-8202255IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11206250No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14206248IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-15207251No hitNo description
PfamPF003207.5E-14208244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEDDHMH RPIPVDDEDD DEYDDGSGGG CGNDGDDAME DLEETNVNSV  60
SVAEHGGVVM ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDVPT GIPTIDVPYN  120
QNNRGVGDST KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL  180
KESSGPSGWD LSQSVDGTNR PETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLRK GGRNLSVDHI ETETPIEIKP LIVEGEISGN QDEHGTSEDP SKTVTEGSND  300
PSVNPGKEFK STSIPLSVHW SLGNLHFHVV QDLHGANEDL ASTLPIGIVH SSANADEQEP  360
LPELSNPSDT DIDIPTNFD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023415.10.0GATA transcription factor 24
SwissprotQ8GXL78e-68GAT24_ARATH; GATA transcription factor 24
TrEMBLW9RAA30.0W9RAA3_9ROSA; GATA transcription factor 24
STRINGXP_010099556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]