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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099090.1 | ||||||||
Common Name | DREB5F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18558.8 Da PI: 6.5127 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.6e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +grWvAe+r p++ rkr++lg++ t++eAa a++aa +l+g XP_010099090.1 27 RYKGVRMRK-WGRWVAEVRQPNS---RKRIWLGSYNTPQEAALAYDAAVFCLRG 76 69*****99.*******888732...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-29 | 27 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.3 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 27 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-33 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.76E-24 | 32 | 86 | No hit | No description |
PRINTS | PR00367 | 1.3E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MVKPGIRRER NSSTGGQNDV VGGGGGRYKG VRMRKWGRWV AEVRQPNSRK RIWLGSYNTP 60 QEAALAYDAA VFCLRGPSVL LNFPETPPEI PSAGDLSPSQ IQEAACRHSH SFPATAEVSP 120 VEAEISEGML KFPAEDGEAS YGLGMAEVGV HKGDDGLTCE THYQPPSLWT F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 21 | 84 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF678387 | 0.0 | KF678387.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5F) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099090.1 | 1e-125 | ethylene-responsive transcription factor ERF011 | ||||
Swissprot | Q84QC2 | 4e-33 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q9S7L5 | 6e-33 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | W6FG96 | 1e-124 | W6FG96_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010099090.1 | 1e-125 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15296 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21386099 |