PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098872.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 174aa    MW: 19601.4 Da    PI: 10.5336
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098872.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.6e-204073134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+ttkTplWR gp g+k+LCnaCG++yrkk 
  XP_010098872.1 40 CVDCRTTKTPLWRGGPAGPKSLCNACGIRYRKKM 73
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.9933470IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-143478No hitNo description
SMARTSM004012.0E-173488IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.1E-173773IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.82E-153994No hitNo description
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PfamPF003206.8E-184073IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSVAYRAFYA QYISLPLRFQ VFLGKESFGD VEANENKRSC VDCRTTKTPL WRGGPAGPKS  60
LCNACGIRYR KKMVSVMRMS TGSSSERIKR DRTHTHSNTS NSTTLTNDTN TSVGKDKDFN  120
ETLKVKLDDF GKEVLSQKSR PVVKKQRCRR KRKLSEEEQA AVLLMSLSCG SVFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023019.11e-108GATA transcription factor 16
TrEMBLW9RGM31e-126W9RGM3_9ROSA; GATA transcription factor 16
STRINGXP_010098872.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-27GATA transcription factor 16