PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098663.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ZF-HD
Protein Properties Length: 258aa    MW: 27550.4 Da    PI: 7.2417
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098663.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.51.4e-3258113359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +vrY+eClkNhA+++GghavDGC+Efm++ geegt++alkCaAC+CHRnFHR+e ++
  XP_010098663.1  58 GVRYRECLKNHAVNIGGHAVDGCCEFMAA-GEEGTIDALKCAACNCHRNFHRKEISD 113
                     69**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2259110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2959111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-2860111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.71561110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.66E-22181256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-33182257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25195251IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEFDEHDDPD EEMEIPTVLP PGYDSSSAAA AARTINKSEV VGGGGGGASS NSRKNSGGVR  60
YRECLKNHAV NIGGHAVDGC CEFMAAGEEG TIDALKCAAC NCHRNFHRKE ISDSSSPGAA  120
AAASDHPNYL YHHHHHQNFP GGYYRSPPPP SGYLHVRPLA LPGVCGGGRE EGEDHMSNPS  180
SSGGGGGGGG GSSSKKRFRT KFTQEQKEKM LAFAESVGWR IQKHDEAAVE QFCAETGVRR  240
PVLKVWMHNN KHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-301942531675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181191SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098663.10.0zinc-finger homeodomain protein 2
SwissprotA2Z2597e-76ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH57e-76ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLW9R7V30.0W9R7V3_9ROSA; Uncharacterized protein
STRINGXP_010098663.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-66homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]