PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 386aa MW: 42919.2 Da PI: 9.4542 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.4 | 7.6e-18 | 21 | 105 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k XP_010098471.1 21 WTVSETMILIEAKKMDDERRMKRStgndseggsirinkPAELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVRDYERKVM 105 *************966666554333556666667776699*****************************************9964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.899 | 13 | 91 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.4E-13 | 20 | 103 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MADNQGAATT SLMRDYRKGN WTVSETMILI EAKKMDDERR MKRSTGNDSE GGSIRINKPA 60 ELRWKWVEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVRDY ERKVMADHQG ISTSSATDQS 120 YWKLEKNERK DKNLPTNMLP QIYEALVEVV EKKPPRALAA LVPITSTPPA TVVGYNVVER 180 IIGGGGGSGR GSGTSIIHHH QQQTPLVASA QALLQHHISP SPITALPLPP AVPAAPSPMQ 240 AQPLPYPQPI LPTVDSDTSE NPSPHSPAKR RRKTDQQQQQ QQQQEQGTTS ASARISTGTS 300 SSNHEVAFAI SKSASIIAEA LQACEEREER RHRDLLSLHE RRLKIEESKT EVNRQGINGL 360 VDAINNLANS IQALASDKHQ STSKPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098471.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022806.1 | 0.0 | uncharacterized protein LOC21408586 | ||||
TrEMBL | W9R7D1 | 0.0 | W9R7D1_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098471.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 2e-61 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21408586 |