PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098358.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 570aa    MW: 65795.9 Da    PI: 4.9363
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098358.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.41.7e-27374462186
        trihelix   1 rWtkqevlaLiearremeerlrrg...klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev aLi++r+ ++e++ ++   + k+p We+vs+ m++ g++rs+k+Ckekwen+nk+++  ++++ + t+++s+tc+yfdql+
  XP_010098358.1 374 RWPRSEVEALIRVRSGLGEKFHQEpgiNIKGPIWEDVSALMASMGYKRSAKRCKEKWENINKYFRSKTKNNYSATNKVSKTCSYFDQLD 462
                     8*********************9644579***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-4366435IPR009057Homeodomain-like
PROSITE profilePS500907.491367434IPR017877Myb-like domain
SMARTSM007172.5E-4371436IPR001005SANT/Myb domain
CDDcd122039.25E-22373441No hitNo description
PfamPF138377.9E-18374464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MQSNYERAES SSDLPDAQHL TDSCCEYSCS PPFFPHNILP PVNPSMQINQ HFSLLHHQQG  60
LLNITAQQQY YSDIAQQHQY NSHTNPIFTH QFFQEWPVQF QPWQAQRRET PADQSSHSND  120
LFPVMNFKLG GNYLLDALPE NRPYSLEFTP KFCRQTQEYS TAKQPFCKDI HDIPNADKKN  180
NQFGDVREIC NELEEIYGLV KNSTSKQLTG TGSALTREAN LEPAPFCQEE ETSPKIELHK  240
KKKRRRKSSK ELLSSMAGFF EGLVEQVMSH QDRLHSNFLE AIDRIDRERR EREEEWRRQE  300
AQTQNREAMA RVHEQVLASS REALIVSYLE KITGQTVDLP SGFKNSPDDL IISELSNLEE  360
MSDISKSAEK NMRRWPRSEV EALIRVRSGL GEKFHQEPGI NIKGPIWEDV SALMASMGYK  420
RSAKRCKEKW ENINKYFRSK TKNNYSATNK VSKTCSYFDQ LDQLYARVNT PKMFNVGPSS  480
SSSISPYCAK PLVDGFGAQS QRQSYIELME TFGVAEPSSS GNLDFDGVDF HDKVEFERVD  540
RDAEKLNHMD EDDEVFEDEI EEEDDPDDEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244KKKKRR
2240245KKKRRR
3240246KKKRRRK
4241246KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098358.10.0trihelix transcription factor GTL2
TrEMBLW9RHL00.0W9RHL0_9ROSA; Trihelix transcription factor GT-2
STRINGXP_010098358.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-31Trihelix family protein