PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098082.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 755aa    MW: 83936 Da    PI: 5.9896
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098082.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-21101156156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_010098082.1 101 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 156
                     7999************************************************9877 PP
2START232.31.3e-722724944206
                     HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ++  +elvk+a+a+ep+Wv+s+    e++n+de++++f  ++        +s+ea+r++gvv+++l++lv++++d++ qW+e+++    ka++++
  XP_010098082.1 272 NQSIDELVKMATAREPLWVRSVetgrEILNYDEYVKEFNVENPsnikgpkRSIEASREVGVVFADLPRLVQSFMDVN-QWKEMFPcmisKAAMVD 365
                     67789*********************************7777799********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vi+sg      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d+ +++  ++s+v+++++pSg++ie+ksngh+kvtwveh +
  XP_010098082.1 366 VICSGegdnknGAVQLMFAELQMLTPTVPtREVYFVRFCKQLNAEQWAIVDVSIDEVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLE 459
                     ***********************************************************98.9******************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++h ++r +v+sgla+ga++w atlq qce+
  XP_010098082.1 460 CQKSTVHTMYRAIVNSGLAFGARHWIATLQLQCER 494
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2386152IPR009057Homeodomain-like
SuperFamilySSF466891.92E-2091159IPR009057Homeodomain-like
PROSITE profilePS5007118.09198158IPR001356Homeobox domain
SMARTSM003898.6E-19100162IPR001356Homeobox domain
PfamPF000461.0E-18101156IPR001356Homeobox domain
CDDcd000868.68E-17105156No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084839.624260497IPR002913START domain
SuperFamilySSF559617.14E-33262494No hitNo description
CDDcd088753.14E-110264493No hitNo description
SMARTSM002341.2E-74269494IPR002913START domain
PfamPF018526.0E-59271494IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-5323488IPR023393START-like domain
SuperFamilySSF559612.61E-15524743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MGVDMSNTPP TSHTKDYFAS PALSLSLAGI FRDAGAAATA ANMEVEEGEE GSCGGKKDDT  60
VEMSSENSGP ARSRSDDEFD GEGEHDDDGT GDGDKNKKKK RKKYHRHTAD QIREMEALFK  120
ESPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKSE IDKLRDENKS  180
LREQINKSCC PNCGTSTVSR DATMTTEEQQ LRIENAKLKA EVEKLRAAIR KHPLGATSPS  240
CSAGNDQENR SSLDFYTGIF GLEKSRIMEI VNQSIDELVK MATAREPLWV RSVETGREIL  300
NYDEYVKEFN VENPSNIKGP KRSIEASREV GVVFADLPRL VQSFMDVNQW KEMFPCMISK  360
AAMVDVICSG EGDNKNGAVQ LMFAELQMLT PTVPTREVYF VRFCKQLNAE QWAIVDVSID  420
EVEENIDASL VKCRKRPSGC IIEDKSNGHC KVTWVEHLEC QKSTVHTMYR AIVNSGLAFG  480
ARHWIATLQL QCERLVFFMA TNVPMKDSTG VATLAGRKSI LKLAQRMTWS FCRAIAASSY  540
NTWTKVSSKT GEDIRIASRK NLNDPGEPLG VILCAVSSVW LPVSPHALFD FLRDESHRSE  600
WDIISRTGSV ESMANLAKGQ DRGNAVSIQT MKSKENSMWI LQDCCTNAYE SMVVYAPVDI  660
TGMQSVMTGC DSSNLTVLPS GFSILPDGVE SRPLVITSRP EEKTSEGGSL LTVAFQILTN  720
TSPTAKLTME SVDSVNTLIS CTLKNIKTSL QCEES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KKKKRK
296102KKKKRKK
398102KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098082.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098082.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLW9REF20.0W9REF2_9ROSA; Homeobox-leucine zipper protein GLABRA 2
STRINGXP_010098082.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]