PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097625.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 706aa    MW: 76376.6 Da    PI: 5.0481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097625.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06278298526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_010097625.1 278 PCPEFRK-GSCRQGDACEYAHG 298
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.7E-770141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-1172151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1274153IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.94774149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001274104IPR002110Ankyrin repeat
CDDcd002045.71E-1176149No hitNo description
PROSITE profilePS500889.377109144IPR002110Ankyrin repeat
SMARTSM002480.89109141IPR002110Ankyrin repeat
SMARTSM003561.0E-4273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662278300IPR000571Zinc finger, CCCH-type
SMARTSM0035633308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822308332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MCSGSKRKPE AAGLIMDGEL EKQEGLRYNS VLLELSASDD LVGFKSAVEE EGLDIDEASL  60
WYGGRIGSKK LGFEERTPLM IAAMFGSKDV LNYILEIGCV DVNRSCGSDK ATALHCATAG  120
ASAASDEVVK LLLAASADAN SLDASGNRPG DLILPVRSSA FNLKKKDLDA MLNGSNGIDE  180
AFGLPEQVVD ELEEEERPEI LTLRAAKDGV EKKEYPVDLS LPDIKNGIYS TDDFRMYTFK  240
IKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGSCRQG DACEYAHGIF  300
ECWLHPAQYR TRLCKDETGC QRRVCFFAHK PEELRPLYAS TGSAVPSPRS FSASASSLDM  360
GSITPLALGS PSVLMPPSTP PMTPSGASSP MGGNMWQNQS NIAPPSLQLP GSRLKSALSA  420
RDMNFDIETH RRRQQQLRDE IAGISSPSSW NNGLSNPSAF SMLGDRTGEL NRLGGVKPTN  480
LEDVFGSLDP AILSQLQGLS LDTTTASQLQ SPTGIQMRQS MNQQLNSSYP ISLSSSPARA  540
SPLFGDTSGG SAAAVLSARA AAFAKRSQSF IERSVVNRHS GISSPAGSSI MASSNLSDWG  600
SPDGKLDWGI QGEELNKLRK SASFGLRSSG GSYAAATAAA STPATVDEPD VSWVQSLVVE  660
PQPKKTVQYN NNSFEEQQQC HFDTPVPEML PAWVEQMYME QEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097625.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLW9T2010.0W9T201_9ROSA; Zinc finger CCCH domain-containing protein 66
STRINGXP_010097625.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein