PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010097137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 21774.5 Da PI: 8.0788 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g XP_010097137.1 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDQAARIMCG 56 69******9.**********8.....334**********************98765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.14E-32 | 6 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.035 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 7 | 66 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-11 | 7 | 55 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-40 | 7 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDQA ARIMCGPKAR 60 TNFPYNPNEP HSSSSNKLLS DTLKAKLQKC NVASLQMAKQ PVLSEPHVAQ YRSATPVSTS 120 SAGIAGNRGM AGFEWPEKRG GVVDWPEGNW VGGNGQGEIS STNQQLIKPL EDDHIEQMIE 180 ELLDYSYIEL CPGVP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 6 | 68 | 4 | 67 | ATERF1 |
3gcc_A | 5e-17 | 6 | 68 | 4 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010097137.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097137.1 | 1e-146 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 3e-68 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | W9RS58 | 1e-144 | W9RS58_9ROSA; Ethylene-responsive transcription factor | ||||
STRING | XP_010097137.1 | 1e-145 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1106 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-59 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21408368 |
Publications ? help Back to Top | |||
---|---|---|---|
|