PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 347aa MW: 38128.5 Da PI: 7.6499

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010097108.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	140	160	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++ G Ck Gd+C FaHg XP_010097108.1 140 ACAEFRK-GNCKKGDSCEFAHG 160 6999*.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.136	87	124	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-5	133	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-5	135	161	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.624	136	162	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-5	140	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.056	170	194	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	170	193	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MMLGEPPPTR SNPTVQIPQW DSFDDPTAGI NSPFSVSSPS FNNVGAGGDC SHYLEAFASL 60 HRYLPSNEFF PGESDSLSDE SDSAAHAVDA FSCDHFRMFE FKVRRCARGR SHDWTECPFA 120 HPGEKARRRD PRKHHYSGTA CAEFRKGNCK KGDSCEFAHG VFECWLHPGR YRTQPCKDGL 180 SCRRRVCFFA HTPEQLRVLS PTDSPVRLSN GSFGSSPTSI LTSPPISPPS ESPPNSPQNS 240 ELVAAMRNLR IGKSKMNSPP SWGFGSPRGG SMLRPGFCSV PSTPTQGQVP NLWDQSCDEE 300 PTMERVESGR NLRAIMYAKL SKENSLGRVD SPGSGAPDVG WISELVK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MMLGEPPPTR SNPTVQIPQW DSFDDPTAGI NSPFSVSSPS FNNVGAGGDC SHYLEAFASL  60
HRYLPSNEFF PGESDSLSDE SDSAAHAVDA FSCDHFRMFE FKVRRCARGR SHDWTECPFA  120
HPGEKARRRD PRKHHYSGTA CAEFRKGNCK KGDSCEFAHG VFECWLHPGR YRTQPCKDGL  180
SCRRRVCFFA HTPEQLRVLS PTDSPVRLSN GSFGSSPTSI LTSPPISPPS ESPPNSPQNS  240
ELVAAMRNLR IGKSKMNSPP SWGFGSPRGG SMLRPGFCSV PSTPTQGQVP NLWDQSCDEE  300
PTMERVESGR NLRAIMYAKL SKENSLGRVD SPGSGAPDVG WISELVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010097108.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097108.1	0.0	zinc finger CCCH domain-containing protein 23
Swissprot	Q9M0G2	1e-112	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	W9RE58	0.0	W9RE58_9ROSA; Zinc finger CCCH domain-containing protein 49
STRING	XP_010097108.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-109	C3H family protein

Link Out ? help Back to Top
Entrez Gene	21402486

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]