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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010097107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35546.7 Da PI: 6.5922 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.8e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +r+ g++R++k+c++rw++yl XP_010097107.1 14 RGPWSPEEDATLKTYLQAHGTGgNWIALPRKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.14 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.55E-20 | 14 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 15 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.46E-8 | 16 | 62 | No hit | No description |
SMART | SM00717 | 10 | 67 | 101 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.472 | 79 | 99 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 80 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKTYLQ AHGTGGNWIA LPRKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDHIIS SQLPGRTDND VKNYWNTKLK KKLLAGKISL TTIGPTNGQL 120 IPTTNNSTTL PGSTMSVSSL QIPNSCVPKV EIFDHSFPNS ETQNSATLRM LSDNPGTVYD 180 QRYLRSQYDQ NPLYSNPGFM MDFSADEFDH VRAKNSHITS DNVSLSKEGS GTISDSYLLA 240 LSDNKRASVL PHNGCDEYYA GHGSTLLDFG FGLPYDIVDG VSFEGKANSD DHVAPTCCIS 300 LSDLGFVEIR PQAGLDQSIL NNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-17 | 14 | 103 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-17 | 14 | 103 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-17 | 14 | 103 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010097107.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021830.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | W9RBT2 | 0.0 | W9RBT2_9ROSA; Transcription factor RAX3 | ||||
STRING | XP_010097107.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 5e-61 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402485 |