PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097107.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 323aa    MW: 35546.7 Da    PI: 6.5922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097107.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + + +G+g +W + +r+ g++R++k+c++rw++yl
   XP_010097107.1 14 RGPWSPEEDATLKTYLQAHGTGgNWIALPRKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.14966IPR017930Myb domain
SMARTSM007176.6E-111364IPR001005SANT/Myb domain
PfamPF002499.7E-141462IPR001005SANT/Myb domain
SuperFamilySSF466893.55E-2014100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-231579IPR009057Homeodomain-like
CDDcd001678.46E-81662No hitNo description
SMARTSM007171067101IPR001005SANT/Myb domain
PROSITE profilePS500904.4727999IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-980109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKTYLQ AHGTGGNWIA LPRKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDHIIS SQLPGRTDND VKNYWNTKLK KKLLAGKISL TTIGPTNGQL  120
IPTTNNSTTL PGSTMSVSSL QIPNSCVPKV EIFDHSFPNS ETQNSATLRM LSDNPGTVYD  180
QRYLRSQYDQ NPLYSNPGFM MDFSADEFDH VRAKNSHITS DNVSLSKEGS GTISDSYLLA  240
LSDNKRASVL PHNGCDEYYA GHGSTLLDFG FGLPYDIVDG VSFEGKANSD DHVAPTCCIS  300
LSDLGFVEIR PQAGLDQSIL NNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-17141034105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-17141034105C-Myb DNA-Binding Domain
1msf_C2e-17141034105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021830.10.0transcription factor RAX2
TrEMBLW9RBT20.0W9RBT2_9ROSA; Transcription factor RAX3
STRINGXP_010097107.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.15e-61myb domain protein 68