PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010096853.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 266aa MW: 29205 Da PI: 4.6393

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096853.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	239	262	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H XP_010096853.1 239 FQCKSCNRSFGSDIALQSHTKAkH 262 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.340	7.5E-4	3	73	IPR024057	Nucleoplasmin core domain
PROSITE profile	PS50157	11.281	239	266	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	241	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEFWGVEVKS GESFVVQEEY ETILHLSLAC LGEVKKDKGS EPVHLFAKVD DKKFVIGILS 60 SEKFPQISFD LVFEKDFELS HNWKNGNEYS DSEDEIAPVP IELGQSSLQA KPEEKNVDVN 120 KDVKSDQKAQ VKSEEESSDD DDESEDEDDS EDEETDGSEE EEENKVDISK KRPAEASKKT 180 SGGDKKAKFQ TPEKAVAKTS GNKVGGHTAT PHPAKQAGKT AAKNEQQPKQ QAPKAGGAFQ 240 CKSCNRSFGS DIALQSHTKA KHATAK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021650.1	1e-163	histone deacetylase HDT1
TrEMBL	W9RRE3	0.0	W9RRE3_9ROSA; Histone deacetylase HDT1
STRING	XP_010096853.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	7e-25	histone deacetylase 3

Link Out ? help Back to Top
Entrez Gene	21387093