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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 432aa MW: 48729.6 Da PI: 7.644 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.9 | 7.9e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ XP_010096550.1 21 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSS 114 579***************************.89***************9888999***************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_010096550.1 115 eGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 148 56667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-58 | 15 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.92 | 21 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-26 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDHERSSTDH STDKVLVDEV MLPGFRFHPT DEELVGFYLK RKIQQRPLSI ELIKQLDIYK 60 YDPWDLPKLA STGEKEWYFY CPRDRKYRNS ARPNRVTRAG FWKATGTDRP IYSSEGTKCI 120 GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDHSVPSSK RSLDKSFPAN DSWAICRIFK 180 KTNSTAQRAL SHSWVSPLPE PISSSDHILF AKPTNNSQFS SETSINMSLT PRTSTPTSSA 240 NYFGSSNNDM QNSSPNSTTT TFSPVDFVPY KPYCADYSPN LLFPPLQTTS GVQAANDNIT 300 PSMLLNMSSI LGNNHFGCSS TSKASHHEDH IDLISGLSSV QEHCNSNGFS YDHILQENLG 360 NNIIGTYDHM IKNHSEAHHD QWEAVRSLGF PFNLPLPLST VVADPWKPSM IWDSLPCPTE 420 MSTNFPTTKC YT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 23 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 23 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 23 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 23 | 188 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 23 | 188 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 23 | 188 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 23 | 188 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096550.1 | 0.0 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 1e-107 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | W9RCM8 | 0.0 | W9RCM8_9ROSA; Protein FEZ | ||||
STRING | XP_010096550.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-105 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21384632 |
Publications ? help Back to Top | |||
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