PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096504.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 418aa    MW: 47857.4 Da    PI: 9.7753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096504.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.2e-12551291494
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       l++pk+f++++g+  + s  + ++ ++g +W++ l  +k++g ++ +kGW eF++   L+ g +++F+++g s+f   v
  XP_010096504.1  55 YKLRIPKEFTKKYGK--TLSNPVGIKVPNGTKWKIWL--TKYDGDVWSAKGWLEFAHYFSLENGQTLIFSYKGCSQF--DV 129
                     4599*********94..577889999***********..********************************987777..44 PP
2B347.23.9e-15260349895
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + +++  +v+p +f  +h +k  +    tl+ ++gr+W+v+l +       ++ y+l++GW+eFv++n+ k gD+++F+l++++e+e  +k
  XP_010096504.1 260 GHLHNRYEFVFPIDFWFQHLYKVDG--AATLYVSDGRTWTVELYVrligLSDRKIYFLRTGWREFVEDNDPKIGDVCIFELTNKNEKEISFK 349
                     4455567789999999889555444..58889999********447764444444*************************998777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1736135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1840135IPR015300DNA-binding pseudobarrel domain
CDDcd100178.67E-1341132No hitNo description
PROSITE profilePS5086311.85742135IPR003340B3 DNA binding domain
SMARTSM010192.4E-743135IPR003340B3 DNA binding domain
PfamPF023624.8E-956128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18246352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20247352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-19251354No hitNo description
PROSITE profilePS5086313.183253356IPR003340B3 DNA binding domain
SMARTSM010192.8E-4253352IPR003340B3 DNA binding domain
PfamPF023627.2E-13258349IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSIHKAEREG VCKLQPIRRS TVAPYVHPRV RKLKDISPVT PHFLTRVSYN TLLDYKLRIP  60
KEFTKKYGKT LSNPVGIKVP NGTKWKIWLT KYDGDVWSAK GWLEFAHYFS LENGQTLIFS  120
YKGCSQFDVV IIGTNGLEID YPLIISNFNS TPIKETDIDD ASSCVKANEK SPPPFPCAQK  180
RMKKNLRAAP TQCGSREINP ENPMNRGNQP HSFESHRAKP QVRAVPKQRP LNKAEKDKAL  240
SRTKDFTSQY PHFKVVMQRG HLHNRYEFVF PIDFWFQHLY KVDGAATLYV SDGRTWTVEL  300
YVRLIGLSDR KIYFLRTGWR EFVEDNDPKI GDVCIFELTN KNEKEISFKV AIDRGGDYQN  360
SQPSQADKNT ANQDQREKSP SAISKTASSS YKDETCNMQS PVDHIAEEGA ALLRGNRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021494.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLW9RA510.0W9RA51_9ROSA; B3 domain-containing transcription factor VRN1
STRINGXP_010096504.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-29B3 family protein