PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010096015.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 307aa MW: 32733.5 Da PI: 9.0792

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096015.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_010096015.1 101 FSCNFCKREFSTSQALGGHQNAH 123 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.94E-6	98	128	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.1E-4	99	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	101	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGDGLGTEAC PSEASSISAA SDGDENKKMM IMKMKMKEPE VPEQVPGSSS RLLLDLKLSN 60 GKSIGGSKLE LNLFDTLSPG SGLKSNINEP SDEKNEQTRV FSCNFCKREF STSQALGGHQ 120 NAHKQERALA KRRQGIDLGA LSSSHYPYYP YYSSFSPAHS NLYGSNFRSS LGVRMDSMIH 180 KPNSAYSWSG SATGGYRYGH EIAGTSTWSR QAAAMNSHRP IDHRLSTDGF QARNIGGGLG 240 LGGNITCGVT SSRIEENGAL RNNFGVSGTN VGVNPAIGGA DLGRRGVEPL KKNHSDAPAG 300 LDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096015.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096015.1	0.0	uncharacterized protein LOC21406756
TrEMBL	W9R0J0	0.0	W9R0J0_9ROSA; Zinc finger protein 1
STRING	XP_010096015.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	7e-19	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21406756