PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095978.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family G2-like
Protein Properties Length: 504aa    MW: 55346.9 Da    PI: 6.1126
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095978.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32265319155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHerF+eav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl
  XP_010095978.1 265 KPRMRWTPELHERFIEAVRKLYGAEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 319
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.237262322IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-30263320IPR009057Homeodomain-like
SuperFamilySSF466895.38E-17264319IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-24265320IPR006447Myb domain, plants
PfamPF002497.6E-9267318IPR001005SANT/Myb domain
PfamPF143794.2E-23366413IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MMNRHSIVSV TQSEPSKGVP QPYCIPVHDF LSIGSEGKSL LVGECSSPHP SPFIRTESLG  60
SPFIGAASTH PPKFYYGSEL NSPASPGSHT HHAKNAFSRS SVFCTSLYQS SSSSSETHRQ  120
LGNLPFLPPP TCNQSSSAVD TKSPLIFSGD ITNNEYGNDE SEDLLKDFLN LPGDASQNRF  180
HSLTCASDSL ALTEQLELHY LSDDLDIAIT DHGETPGVDE IYETPQAPLK PSIELMCNQS  240
HRSAAPPPID SLSIHPSPGP AAAHKPRMRW TPELHERFIE AVRKLYGAEK ATPKGVLKLM  300
KVEGLTIYHV KSHLQKYRLA KYMPEKKEVD TYALSCLSPE KKPSSPEEKK TVSINNESDG  360
RRKGSVQITE ALRMQMEVQK QLHEQLEVQR ALQLRIEEHA KYLQKILEEQ QKAGSALASS  420
QALSSVTSPC SQDSERQPPP SVLKSPPQLA ESKSDSSLSS LPSKSKAGES GRDCEPEESN  480
KRLRLDEEEK CAGDETVVEN ADQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-26265322259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021118.10.0myb family transcription factor PHL6
RefseqXP_024021119.10.0myb family transcription factor PHL6
SwissprotQ949U21e-122PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLW9R8N60.0W9R8N6_9ROSA; Myb family transcription factor APL
STRINGXP_010095978.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-111G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]