PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095677.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 692aa    MW: 77021.6 Da    PI: 5.7777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095677.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0699123526
                     --SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                     +C+  a+tG    C+y d+C+F+H+
  XP_010095677.1  99 ICPVVAKTGdvsSCPYNDKCRFSHD 123
                     59999*******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.76594125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-499125IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.841138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.2E-70336579IPR013785Aldolase-type TIM barrel
CDDcd028012.20E-88340575No hitNo description
SuperFamilySSF513959.94E-61340653No hitNo description
PfamPF012075.1E-50343602IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360424442IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MSDSEVQLGE GQNDSAAAAA AASNLPVEKT PEELVAKAVA PVKREFLRPP PLRPSSNNRG  60
GAVSEEKAEP PQSAIVKEKK SKRQLKRERR EQKKSTSHIC PVVAKTGDVS SCPYNDKCRF  120
SHDIEAYKDQ RPDDLEGECP FVSAEEPCPY GLTCRFLGTH REDVSVECIN ACRNRSEMNV  180
FSKDVQKLLW KNKMSFPKAD AKLKDLGLLK HANSKAKISV DKEDDQIALR KCQVTNGNGP  240
IDLTDKDSEM EISARITEND AADETPESNE LPPLKKPKCV VSECCSSEAE DADVFVVEKV  300
VSENCNQPEA EATADMVTPE ADRSLKLHPR EKKIIDFREK LYLAPLTTVG NLPFRRVCKV  360
LGADVTCGEM AMCTNLLQGQ ASEWALLRRH TSEDLFGVQI CGAFPDTVAR AVELIDQECS  420
VDFIDINMGC PIDIVVNKGA GSALLMKPMR LKGVVEAASG TVEKPITIKV RTAYFEGKNR  480
IDSLIADIGN WGASAVTIHG RSRQQRYSKL ADWEYIYQCA IKAPDPLQVL GNGDIFSYLD  540
WNKHKADCPE LSSCMIARGA LVKPWIFTEI KEQRHLDISS GERLDILKNF VRFGLEHWGS  600
DTKGVETTRR FLLEWLSYTC RYIPVGLLDI IPQRLNWRPP SYYGRDDLET LMASDSAADW  660
LRISEMLLGK VPDGFTFAPK HKSNAYDTAE NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A2e-2733758427266tRNA-dihydrouridine synthase B
6ei9_B2e-2733758427266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095677.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLW9QZK00.0W9QZK0_9ROSA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_010095677.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]