PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010095198.1 | ||||||||
Common Name | DREB2B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 402aa MW: 44260.9 Da PI: 8.231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 65 | 114 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + ++GVr++ +g+Wv+eIr p + r r +lg+f ta eAa a+++a+++++ XP_010095198.1 65 CSFRGVRQRT-WGKWVSEIRAP---N-RgSRLWLGTFPTAIEAALAYDEAARAMY 114 579****999.**********8...3.35**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-11 | 65 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.66E-28 | 65 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.0E-30 | 66 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-33 | 66 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-19 | 67 | 123 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.9E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51473 | 15.665 | 182 | 285 | IPR002902 | Gnk2-homologous domain |
Pfam | PF01657 | 4.5E-15 | 199 | 281 | IPR002902 | Gnk2-homologous domain |
PROSITE profile | PS51473 | 19.313 | 292 | 397 | IPR002902 | Gnk2-homologous domain |
Pfam | PF01657 | 2.5E-13 | 307 | 394 | IPR002902 | Gnk2-homologous domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MPRLENRHSR GDGSKSLAET LAKWREYNDR LYSTEGVHKP IPRVPAKGSK KGCMKGKGGP 60 ENSRCSFRGV RQRTWGKWVS EIRAPNRGSR LWLGTFPTAI EAALAYDEAA RAMYSSCARL 120 NFPNISISVS GLQKDSPSVA TPSVSSSQAT PAGSEFSGTP NNLEDCAGEE VVKPVSNNTQ 180 IEAAIHPALG AYPLTHICSD FETSLRKLIS YLSFQTPPTV FGIFGTGQIF DEAYGFALCR 240 GDLFPTDCAR CVIEASEEIL RLCPYKPDAA IWYDHCLRRY HSNDIFGKID TQRVPRFASA 300 ASIGENEVAF SESTRRLLGG LSQNASVDRN LYASDEIAID DSRKIHGMAQ CTRDLSKSEC 360 KRCLDHLVDS AVGCCSGKRG VRIISASCYL RYELYPFSNI SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6grf_A | 2e-16 | 201 | 392 | 24 | 211 | Cysteine-rich repeat secretory protein 15 |
6grf_B | 2e-16 | 201 | 392 | 24 | 211 | Cysteine-rich repeat secretory protein 15 |
6grf_C | 2e-16 | 201 | 392 | 24 | 211 | Cysteine-rich repeat secretory protein 15 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010095198.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF678400 | 0.0 | KF678400.1 Morus notabilis dehydration responsive element binding transcription factor (DREB2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095198.1 | 0.0 | cysteine-rich repeat secretory protein 38 | ||||
TrEMBL | W6FHL7 | 0.0 | W6FHL7_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010095198.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 2e-32 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Entrez Gene | 21392093 |