PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094912.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 758aa    MW: 81528.1 Da    PI: 6.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094912.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-14480521955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     E+rRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  XP_010094912.1 480 EQRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 521
                     9********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.754471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-14478525No hitNo description
SuperFamilySSF474591.57E-17478544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17478529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11479521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPLSELYRLA KRRVDSNQDF ENGNDVFELV WENGQITTQG QSSRVRKEPT CNSLPSHCLP  60
SYTPKSRDKD LGNGTTTKTG KFGTVDSVLN EIPMSVPSDG VGLSHDDDMM PWLNYPMDGS  120
LQHEYCRDFL PELSGVTVNE ISKSNNNFAT NDKSSCNQLY RESNANSVDY CASLEQRNNS  180
SKVGSVVASD VSTRPRTGTS QLYSSSSSQQ CQASFPSFRS RVLDTVGDNT TSAAHHAVCN  240
DSGRVSSVGG FPSLKMHNRQ DSIPPSNSFN VLNFSHFTRP AALAKASLQN IGTMPGSNMP  300
NKEKGCAANG NNPPKSGLID TGSGLRKETS AHCQVVASSG VNLKPSEARS LEEPCAAKDS  360
EAVCREDASK NDINNSFPCE STNRALPDGE KNIEPVVASS SVCSGNSVER ASDDPTHVLK  420
RKFRDTEDSE CHSEDVEEES VGVKKTAPPR ASGSKRSRAA EVHNLSERIL NGFFIFHLSE  480
QRRRDRINEK MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLCMPPMML  540
PTGMQPMHAP HMTHFLPMGV GMGMGLGMGF GMGMPDMNGG SSGYPMFQFP PMQGAHFPGP  600
PMPGHTAAFH GMTGPNLQVF GLPGQGLSMP MQRAPLVPVL GGPFMKSAMG LNASGAGGSM  660
ENMESTQPYT SKDPAQNMGS HVVQNAGPSS SMNQTNSQCQ ATNEGFEQSP LVQSNVQVSD  720
VNGNKASASA NGNDARPSTA ASKLKLAKFQ TLEFSLTY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020429.10.0transcription factor PIF3
TrEMBLW9QXL30.0W9QXL3_9ROSA; Uncharacterized protein
STRINGXP_010094912.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-53phytochrome interacting factor 3