PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094743.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 348aa MW: 39292.3 Da PI: 6.8737

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094743.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.5e-08	169	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq XP_010094743.1 169 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 216 8***********************9....35599999*******9998 PP
2	HLH	14.3	7.2e-05	246	287	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR +iN+++ L++++P + k + a +L + ++Y++sLq XP_010094743.1 246 QVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 287 78****************9....35599999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-16	163	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.48E-9	163	220	No hit	No description
PROSITE profile	PS50888	15.097	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-15	165	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-5	169	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-8	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.906	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-4	240	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.30E-6	241	291	No hit	No description
SuperFamily	SSF47459	1.31E-11	246	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-11	246	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAEFAADFQS LIKPFLDVDP NMELITQFSG ISPRINHVMD NSSLLNFPFS SDHNMFGNPA 60 PHFPGNMAEN FPGNFNSSNN QLYVNAQSTS APIGNNNEYS HESKKRKAVK NLDVASESSS 120 GISSETGTGI KKKNSSGKGK RVKSNDKEDQ EKPKEVVHVR ARRGQATDSH SLAERVRRGK 180 INERLRCLQD IVPGCYKTMG MAVMLDEIIN YVQSLQNQVE FLSMKLTAAS TYYDFNSETD 240 DMEKMQVRRG KINERLRCLQ DIVPGCYKTM GMAVMLDEII NYVQSLQNQV EFLSMKLTAA 300 STYYDFNSET DDMEKMQQRA KANEAKEMER LIREGYGGFA CFHSSWPL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAEFAADFQS LIKPFLDVDP NMELITQFSG ISPRINHVMD NSSLLNFPFS SDHNMFGNPA  60
PHFPGNMAEN FPGNFNSSNN QLYVNAQSTS APIGNNNEYS HESKKRKAVK NLDVASESSS  120
GISSETGTGI KKKNSSGKGK RVKSNDKEDQ EKPKEVVHVR ARRGQATDSH SLAERVRRGK  180
INERLRCLQD IVPGCYKTMG MAVMLDEIIN YVQSLQNQVE FLSMKLTAAS TYYDFNSETD  240
DMEKMQVRRG KINERLRCLQ DIVPGCYKTM GMAVMLDEII NYVQSLQNQV EFLSMKLTAA  300
STYYDFNSET DDMEKMQQRA KANEAKEMER LIREGYGGFA CFHSSWPL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094743.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020293.1	1e-167	transcription factor BEE 1 isoform X1
Swissprot	Q8GWK7	3e-62	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	W9RJL9	0.0	W9RJL9_9ROSA; Uncharacterized protein
STRING	XP_010094743.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.2	1e-57	BR enhanced expression 3

Link Out ? help Back to Top
Entrez Gene	21402868

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]